Yes, you would use same command. You just need to use where clause like below:
- single quote for string, if it is number, you will not use single quote
- IN clause for multiple values
- AND for and condition
WHERE [Document Type]=3 AND [Document Date] >= 10/1/2018 AND [Customer ID] IN(5565, 7783, 9968, 5573, .etc)
Please let me know if you get error while running it through ssms.